Senior Bioinformatics Engineer

We are seeking a highly motivated Bioinformatics Scientist to join a global research team and contribute to cutting-edge drug discovery and development programs. In this role, you will evaluate, develop, and optimize computational methods to analyze next-generation sequencing (NGS) datasets and design robust bioinformatics pipelines for both high-performance computing clusters and cloud environments.You will collaborate with biologists, data analysts, and cross-functional experts across diverse therapeutic areas, including Oncology, Immunology, Infectious Diseases & Vaccines, Neuroscience, and Pharmacokinetics. ResponsibilitiesDevelop, evaluate, and optimize computational methods for analyzing NGS datasets (WGS, WES, RNA-seq, ChIP-seq, ATAC-seq, single-cell applications)Build robust and scalable bioinformatics pipelines using workflow scripting languages (e.g., Nextflow)Apply methods for alignment, assembly, variant detection, genome enrichment, and phylogeneticsWork with common bioinformatics data formats (FASTA, FASTQ, BAM, VCF, etc.)Collaborate with interdisciplinary teams to deliver actionable insights supporting drug discoveryOperate solutions efficiently on Linux HPC clusters and cloud platformsContribute to scientific publications and present findings to diverse audiences RequirementsPh.D. in Bioinformatics, Computational Biology, or a related field with 1+ years of experience, OR Master’s degree with 5+ years of bioinformatics experienceHands-on experience analyzing NGS datasets (WGS, WES, RNA-seq, ChIP-seq, ATAC-seq, single-cell)Proficiency with pipeline scripting (e.g., Nextflow)Strong programming skills in Python, R, or C++ within Unix/Linux environmentsKnowledge of common bioinformatics methods (alignment, assembly, variant calling, enrichment, phylogenetics)Familiarity with bioinformatics file formats (FASTA, FASTQ, BAM, VCF)Experience with HPC clusters and cloud computingStrong track record of publicationsExcellent communication skills in English (oral and written)Strong collaboration and teamwork abilities Nice to haveExperience with containers (Docker, Singularity)Familiarity with machine learning applications in bioinformatics We offerWe connect like-minded people: Delivering innovative solutions to industry leaders, making a global impactEnjoyable working environment, whether it is the vibrant office or the comfort of your own homeOpportunity to work abroad for up to two months per yearRelocation opportunities within our offices in 55+ countriesCorporate and social eventsWe invest in your growth:  Leadership development, career advising, soft skills and well-being programsCertifications, including GCP, Azure and AWSUnlimited access to LinkedIn Learning and Get AbstractFree English classes with certified teachersDiscounts in local language schools, including online courses for the Kazakh languageWe cover it all: Participation in the Employee Stock Purchase PlanMonetary bonuses for engaging in the referral programMedical & family care packageSix trust days per year (sick leave without a medical certificate)Coverage of psychology sessions of your choiceBenefits package (sports activities, a variety of stores and services) Immerse yourself in our collaborative culture by working on-site at our office in Astana, Almaty or Karaganda. Unlock the potential of remote work in Kazakhstan, giving you the flexibility to work from home or access our offices in Astana, Almaty or Karaganda. EPAM is a team of technologists and innovators united by a passion for technology. In Kazakhstan, we operate across all cities with offices in Astana, Almaty, and Karaganda and work with the world's leading companies from different industries. In 2023, EPAM received the Export Excellence Award at the esteemed Digital Bridge Awards, showcasing our commitment to excellence and innovation.